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Biophysics of Macromolecules – Tutorial

Tutorials for "Biophysics of Macromolecules" (Übungen zur Vorlesung)

  • Since the class is taught online, we will not hand out or collect paper problem sets.
  • Problem sets are made available on this website as PDFs.
  • I strongly encourage everyone to try to solve the problems during the week before they are discussed.
  • We will discuss the solutions via videostream/Zoom, mostly on Thursdays (but we will keep this somewhat flexible, depending on content, public holidays, etc.). In addition, I will upload solutions to this site.
  • During the discussion, students can present their solution to a problem for extra credit. Each problem is up to 5 points. Total extra credit possible per person is 10 points. These points will be added to your final exam score.
Problem set Solution Online Discussion
Problem set 1 [PDF] Solution PS 1 [PDF]
Matlab code problem 3
April 23 April 30

Problem set 2 [PDF]
Paper by
Richardson & Richardson,
Biophys J. 2014 [PDF]

Solution PS 2 [PDF]
Matlab code problem 2
Python code problem 2

 

April 30

May 7

Problem set 3 [PDF]

Paper Nojima, et al.,
JMB
(1977) [PDF, with password]
Data for T. thermophilus PGK [text]
Data for yeast PGK [text]

Data from Maeda, et al.
NAR (2000) [text]

Solution PS 3 [PDF]

Matlab code problem 1
(two-state folding)
Matlab code problem 2
(Hill model)
Matlab code problem 3
(Finite ligand concentration)

May 7 May 14
Problem set 4 [PDF] Solution PS 4 [PDF] May 14 June 4

Problem set 5 [PDF]

Preprint by Jones et al. [PDF]

Solution PS 5 [PDF] June 11 June 18
Problem set 6 [PDF] Solution PS 6 [PDF] June 23 July 2
Problem set 7 [PDF] Solutions PS 7 [PDF] July 5 July 9